STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27560.1PFAM: FG-GAP repeat. (528 aa)    
Predicted Functional Partners:
AGA27561.1
PFAM: Protein of unknown function (DUF820).
       0.773
AGA29423.1
Hypothetical protein.
  
     0.742
AGA29942.1
PFAM: Acetyl xylan esterase (AXE1).
  
     0.699
AGA27384.1
Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel.
  
     0.693
AGA26885.1
PFAM: Planctomycete cytochrome C.
  
     0.677
AGA27559.1
Hypothetical protein.
       0.663
AGA29814.1
Hypothetical protein.
  
     0.659
AGA30200.1
Hypothetical protein.
  
     0.653
AGA29798.1
FG-GAP repeat protein.
  
     0.650
AGA26461.1
Hypothetical protein.
  
     0.624
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.