STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27605.1Transposase family protein; PFAM: Transposase DDE domain; Transposase domain (DUF772). (535 aa)    
Predicted Functional Partners:
AGA28580.1
PFAM: Protein of unknown function (DUF1444).
  
     0.646
AGA24805.1
Transposase family protein; PFAM: Transposase DDE domain.
  
     0.633
AGA27664.1
(acyl-carrier-protein) S-malonyltransferase.
  
     0.615
AGA27096.1
Transposase family protein; PFAM: Transposase DDE domain.
  
     0.610
AGA27183.1
Transposase family protein; PFAM: Transposase DDE domain.
  
     0.610
AGA28826.1
Hypothetical protein.
  
     0.593
AGA28624.1
PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.563
AGA28942.1
Putative transcriptional regulator with C-terminal CBS domains; PFAM: Helix-turn-helix.
  
     0.561
AGA26165.1
PFAM: Protein of unknown function (DUF1444).
  
     0.559
AGA25733.1
Hypothetical protein; PFAM: Bacterial membrane flanked domain.
  
     0.537
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.