STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27721.1Putative translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP. (421 aa)    
Predicted Functional Partners:
AGA27722.1
PFAM: Neutral/alkaline non-lysosomal ceramidase.
 
     0.773
AGA25760.1
Putative membrane-bound dehydrogenase; PFAM: Cytochrome c; Neutral/alkaline non-lysosomal ceramidase; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.739
AGA29280.1
PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.739
AGA29317.1
Hypothetical protein.
  
     0.704
AGA24823.1
PFAM: Kelch motif.
  
     0.685
AGA28774.1
Hypothetical protein.
  
     0.672
AGA24485.1
Hypothetical protein.
  
     0.654
AGA31158.1
Hypothetical protein.
  
     0.641
AGA25083.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
 
    0.635
AGA26293.1
PFAM: FG-GAP repeat.
  
     0.635
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.