STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27744.1PFAM: Aldo/keto reductase family. (414 aa)    
Predicted Functional Partners:
AGA29970.1
Hypothetical protein.
 
     0.690
AGA29971.1
Hypothetical protein; PFAM: Domain of unknown function (DUF362).
  
     0.661
AGA29972.1
Hypothetical protein.
 
    0.656
AGA29336.1
Hypothetical protein.
  
     0.592
AGA27544.1
Zn-dependent protease with chaperone function; PFAM: Peptidase family M48.
  
     0.527
AGA29369.1
ResB protein required for cytochrome c biosynthesis; PFAM: ResB-like family.
  
     0.507
AGA27926.1
PFAM: Beta-galactosidase trimerisation domain.
  
     0.500
AGA29226.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.472
AGA25694.1
Lipid A core-O-antigen ligase-like enyme; PFAM: O-Antigen ligase.
  
     0.466
AGA27745.1
PFAM: Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
       0.465
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.