STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27773.1PFAM: Xylose isomerase-like TIM barrel. (318 aa)    
Predicted Functional Partners:
AGA24829.1
PFAM: Xylose isomerase-like TIM barrel; Belongs to the hyi family.
  
  
 
0.929
AGA27803.1
Lactate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.
   
 
 0.906
AGA30067.1
Lactate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.
   
 
 0.906
AGA26910.1
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PFAM: Aminotransferase class-V.
     
  0.900
AGA24870.1
PFAM: Domain of Unknown Function (DUF1080); Domain of unknown function (DUF3471).
 
     0.744
AGA26175.1
PFAM: Domain of Unknown Function (DUF1080).
 
     0.738
AGA30135.1
PFAM: Domain of Unknown Function (DUF1080).
 
     0.733
AGA26803.1
PFAM: Nucleoside H+ symporter; TIGRFAM: nucleoside transporter.
 
     0.710
AGA27594.1
PFAM: Nucleoside H+ symporter.
 
     0.676
AGA26257.1
PFAM: Domain of Unknown Function (DUF1080).
 
     0.669
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.