STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27811.1V8-like Glu-specific endopeptidase; PFAM: Trypsin. (404 aa)    
Predicted Functional Partners:
AGA31045.1
Putative ATPase.
  
     0.537
AGA27810.1
Hypothetical protein.
 
   
 0.525
AGA24469.1
PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
  
     0.513
AGA28349.1
Ketosteroid isomerase-like protein.
  
     0.459
AGA30603.1
Hypothetical protein.
  
     0.421
AGA28287.1
PFAM: Lipase (class 3); Belongs to the peptidase S1B family.
  
     0.406
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.