STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27823.1Transposase. (347 aa)    
Predicted Functional Partners:
AGA24465.1
PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family; manually curated.
  
     0.774
AGA27329.1
Hypothetical protein.
  
    0.663
AGA31364.1
Hypothetical protein.
  
    0.617
AGA29049.1
Hypothetical protein.
  
    0.601
AGA28576.1
DNA/RNA helicase, superfamily II, SNF2 family; PFAM: SNF2 Helicase protein; Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
  
     0.520
AGA27824.1
PFAM: Response regulator receiver domain; Stage II sporulation protein E (SpoIIE).
       0.493
AGA28934.1
Hypothetical protein.
  
     0.486
AGA28577.1
Hypothetical protein; PFAM: SWIM zinc finger.
  
     0.455
AGA27825.1
PAS domain S-box; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box.
       0.439
AGA25826.1
PFAM: Uncharacterised protein family (UPF0236).
  
     0.419
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.