STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27895.1Hypothetical protein. (267 aa)    
Predicted Functional Partners:
AGA29390.1
Hypothetical protein.
  
     0.544
AGA27896.1
Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
       0.523
AGA24778.1
Hypothetical protein.
  
     0.497
AGA25988.1
Hypothetical protein.
  
     0.492
AGA31408.1
Hypothetical protein.
  
     0.464
AGA30325.1
Hypothetical protein.
  
     0.458
AGA30331.1
Hypothetical protein.
  
     0.424
AGA26408.1
ABC-type Fe3+ transport system, permease component.
  
     0.421
AGA29272.1
Type II secretory pathway, component PulD; PFAM: Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
  
     0.418
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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