STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA27953.1Putative Fe-S oxidoreductase; PFAM: Uncharacterised protein family (UPF0153). (143 aa)    
Predicted Functional Partners:
AGA27954.1
Hypothetical protein.
       0.800
AGA25944.1
Zn-ribbon protein, possibly nucleic acid-binding protein; PFAM: Putative zinc ribbon domain.
 
     0.511
AGA27955.1
PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family.
       0.501
aroD
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA); Belongs to the type-I 3-dehydroquinase family.
  
     0.486
AGA29196.1
Conserved repeat protein; PFAM: Chlamydia cysteine-rich outer membrane protein 6; Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
  
     0.473
AGA29507.1
Hypothetical protein.
  
     0.460
AGA24577.1
PFAM: Protein of unknown function (DUF721).
  
     0.427
AGA27465.1
Zn-dependent protease with chaperone function; PFAM: Peptidase family M48.
  
     0.401
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.