STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28014.1Hypothetical protein; PFAM: Neutral/alkaline non-lysosomal ceramidase. (521 aa)    
Predicted Functional Partners:
AGA27303.1
Hypothetical protein.
  
     0.766
AGA24642.1
PFAM: Neutral/alkaline non-lysosomal ceramidase.
  
     0.764
AGA30200.1
Hypothetical protein.
  
     0.751
AGA27386.1
Hypothetical protein.
  
     0.749
AGA30980.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
  
     0.741
AGA24823.1
PFAM: Kelch motif.
  
     0.738
AGA29280.1
PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.720
AGA25857.1
Prolyl oligopeptidase family protein.
  
     0.704
AGA26651.1
PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
  
     0.697
AGA24841.1
Hypothetical protein.
  
     0.686
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.