STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28074.1PFAM: Bacterial regulatory proteins, tetR family. (244 aa)    
Predicted Functional Partners:
AGA28073.1
TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.773
AGA25355.1
Nicotinamidase-like amidase; PFAM: Isochorismatase family; Trehalose utilisation.
  
     0.485
AGA28075.1
PFAM: DAK2 domain; Dak1 domain; TIGRFAM: dihydroxyacetone kinase, ATP-dependent; dihydroxyacetone kinase, DhaK subunit; dihydroxyacetone kinase, phosphoprotein-dependent, L subunit.
       0.456
AGA25909.1
Hypothetical protein.
  
     0.448
AGA24504.1
PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
  
     0.441
AGA28071.1
Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.428
AGA28072.1
Transposase family protein; PFAM: Transposase DDE domain.
       0.426
AGA27257.1
Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily.
  
     0.423
AGA29319.1
PFAM: Phosphate-selective porin O and P.
  
     0.412
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.