STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28110.1Hypothetical protein. (367 aa)    
Predicted Functional Partners:
AGA27389.1
Sugar-specific transcriptional regulator TrmB.
  
     0.515
AGA28899.1
DNA-binding domain-containing protein, AraC-type.
  
     0.499
AGA31045.1
Putative ATPase.
  
     0.493
AGA27237.1
Putative nucleoside-diphosphate sugar epimerase; PFAM: NmrA-like family.
  
     0.491
AGA28275.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.450
AGA24955.1
Dihydrofolate reductase; PFAM: RibD C-terminal domain.
 
  
 0.443
AGA28349.1
Ketosteroid isomerase-like protein.
  
     0.413
AGA27326.1
Putative nucleoside-diphosphate sugar epimerase; PFAM: NmrA-like family.
  
     0.409
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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