STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28129.1Lipid A core-O-antigen ligase-like enyme; PFAM: O-Antigen ligase. (390 aa)    
Predicted Functional Partners:
AGA28126.1
PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN.
     
 0.796
AGA28127.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
    0.783
AGA28128.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
    0.783
AGA28130.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
    0.783
AGA28131.1
Ribosomal protein L11 methylase; PFAM: Methyltransferase domain.
       0.528
AGA28158.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
  
 0.455
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.