STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28187.1TIGRFAM: TIGR03032 family protein. (364 aa)    
Predicted Functional Partners:
AGA28946.1
Flp pilus assembly protein TadD; PFAM: Tetratricopeptide repeat.
 
 
 0.870
AGA25369.1
Alpha/beta hydrolase superfamily enzyme, predicted hydrolase.
    
 0.745
AGA30620.1
Putative O-linked N-acetylglucosamine transferase, SPINDLY family; PFAM: Tetratricopeptide repeat.
 
   0.680
AGA28188.1
PFAM: Protein of unknown function DUF124.
       0.547
AGA28186.1
Hypothetical protein.
       0.487
AGA28258.1
Hypothetical protein.
 
     0.463
AGA29745.1
Calx-beta domain-containing protein; PFAM: Calx-beta domain.
  
     0.403
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.