STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28192.1Hypothetical protein. (199 aa)    
Predicted Functional Partners:
AGA27926.1
PFAM: Beta-galactosidase trimerisation domain.
  
     0.584
AGA29336.1
Hypothetical protein.
  
     0.560
AGA28848.1
Hypothetical protein.
  
     0.528
AGA29970.1
Hypothetical protein.
  
     0.517
AGA31350.1
Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel.
  
     0.486
AGA25694.1
Lipid A core-O-antigen ligase-like enyme; PFAM: O-Antigen ligase.
  
     0.481
AGA25954.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.474
AGA28193.1
PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
       0.474
AGA28624.1
PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.456
AGA25214.1
PFAM: Protein of unknown function (DUF820).
  
     0.451
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.