STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28247.1Calx-beta domain-containing protein; PFAM: Calx-beta domain. (291 aa)    
Predicted Functional Partners:
AGA28248.1
PFAM: Protein kinase domain; Tetratricopeptide repeat.
 
   
 0.548
AGA28258.1
Hypothetical protein.
 
    0.500
AGA28357.1
Cadherin domain-containing protein,putative collagen-binding protein; PFAM: Cna protein B-type domain; Cadherin domain.
  
     0.476
AGA28246.1
Hypothetical protein.
       0.462
AGA29910.1
Conserved repeat protein; PFAM: Calx-beta domain; Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
  
     0.457
AGA28160.1
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family.
   
    0.455
AGA31402.1
PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; Belongs to the pyruvate kinase family.
   
    0.455
AGA25725.1
Hypothetical protein.
   
    0.453
AGA29087.1
PFAM: Domain of Unknown Function (DUF1080).
   
    0.453
AGA28932.1
VCBS repeat-containing protein; PFAM: Fibronectin type III domain; TIGRFAM: VCBS repeat.
  
     0.402
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.