STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28248.1PFAM: Protein kinase domain; Tetratricopeptide repeat. (1199 aa)    
Predicted Functional Partners:
AGA28249.1
PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor, TIGR02999 family.
 
 
   0.830
AGA29593.1
PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor, TIGR02999 family.
 
 
   0.687
AGA31503.1
PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor, TIGR02999 family.
  
 
   0.666
AGA28270.1
PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor, TIGR02999 family.
  
 
   0.664
AGA25428.1
Serine/threonine protein phosphatase; PFAM: Stage II sporulation protein E (SpoIIE).
 
 
 0.663
AGA27128.1
PFAM: Protein kinase domain.
  
    0.663
AGA24692.1
PFAM: Protein kinase domain; Planctomycete cytochrome C.
  
    0.631
AGA25791.1
PFAM: Protein phosphatase 2C.
 
 
 0.627
AGA27782.1
PFAM: Protein phosphatase 2C.
 
 
 0.588
AGA28247.1
Calx-beta domain-containing protein; PFAM: Calx-beta domain.
 
   
 0.548
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.