STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28270.1PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor, TIGR02999 family. (192 aa)    
Predicted Functional Partners:
AGA28271.1
PFAM: Protein kinase domain.
   
   0.784
AGA28248.1
PFAM: Protein kinase domain; Tetratricopeptide repeat.
  
 
   0.664
AGA29592.1
PFAM: Protein kinase domain.
  
 
   0.635
AGA27486.1
PFAM: Bacterial protein of unknown function (DUF885).
  
     0.495
AGA29245.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.493
AGA28272.1
Transposase family protein; PFAM: Transposase Tn5 dimerisation domain; Transposase DDE domain.
       0.422
AGA26226.1
Putative aminopeptidase; PFAM: PA domain; Peptidase family M28.
  
     0.421
AGA28189.1
Putative aminopeptidase; PFAM: PA domain; Peptidase family M28.
  
     0.415
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.