STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28310.1Hypothetical protein; PFAM: YCII-related domain. (108 aa)    
Predicted Functional Partners:
AGA28309.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
     0.937
AGA28308.1
Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit.
       0.748
AGA25007.1
Hypothetical protein; PFAM: SPFH domain / Band 7 family.
  
     0.608
AGA26432.1
Hypothetical protein.
  
     0.595
AGA29165.1
Hypothetical protein.
  
     0.486
AGA25817.1
PFAM: Domain of Unknown Function (DUF1080).
  
     0.481
AGA26867.1
PFAM: Outer membrane efflux protein.
  
     0.466
AGA28465.1
Hypothetical protein.
  
     0.440
AGA24706.1
Antirepressor regulating drug resistance protein; PFAM: BlaR1 peptidase M56.
  
     0.425
AGA26425.1
Periplasmic component of the Tol biopolymer transport system; PFAM: WD40-like Beta Propeller Repeat.
  
     0.421
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.