STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28334.1Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase. (498 aa)    
Predicted Functional Partners:
AGA28815.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553).
   
 0.895
AGA26759.1
PFAM: Glucose / Sorbosone dehydrogenase; Cytochrome c; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type; conserved hypothetical protein, HNE_0200 family.
   
 
 0.862
AGA25342.1
Cytochrome c; PFAM: Protein of unknown function (DUF1592); Protein of unknown function (DUF1588); Protein of unknown function (DUF1595); PA14 domain.
   
 
 0.843
AGA28333.1
Phosphatidylserine decarboxylase precursor; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
 0.782
AGA25551.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeat.
    
 0.777
AGA25901.1
PFAM: Suppressor of fused protein (SUFU).
    
 0.777
AGA26610.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeat.
    
 0.777
AGA30701.1
Ankyrin repeat-containing protein.
    
 0.777
AGA30702.1
Ankyrin repeat-containing protein.
    
 0.777
AGA31478.1
Ankyrin repeat-containing protein.
    
 0.777
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.