STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28355.1WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; Protein tyrosine kinase. (1222 aa)    
Predicted Functional Partners:
AGA27782.1
PFAM: Protein phosphatase 2C.
 
   0.792
AGA25791.1
PFAM: Protein phosphatase 2C.
 
   0.788
AGA25428.1
Serine/threonine protein phosphatase; PFAM: Stage II sporulation protein E (SpoIIE).
 
   0.786
AGA28356.1
PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1; RNA polymerase sigma factor, sigma-70 family.
   
   0.784
AGA30724.1
PFAM: Protein kinase domain; Tetratricopeptide repeat.
 
 
0.494
AGA27513.1
PFAM: Protein kinase domain; Tetratricopeptide repeat.
 
 
0.476
AGA25643.1
PFAM: Protein kinase domain.
 
 
0.475
AGA28236.1
PFAM: Protein kinase domain.
 
 
0.473
AGA31105.1
PFAM: Protein kinase domain.
 
 
0.472
AGA29367.1
PFAM: Protein kinase domain.
 
 
0.471
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.