STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28357.1Cadherin domain-containing protein,putative collagen-binding protein; PFAM: Cna protein B-type domain; Cadherin domain. (2201 aa)    
Predicted Functional Partners:
AGA26566.1
Hypothetical protein.
 
 
 
 0.622
AGA29098.1
Hypothetical protein.
  
 
   0.508
AGA29090.1
Calx-beta domain-containing protein; PFAM: Calx-beta domain.
  
     0.507
AGA27979.1
Hypothetical protein.
  
   0.499
AGA26994.1
Calx-beta domain-containing protein; PFAM: Calx-beta domain.
  
     0.488
AGA27089.1
Putative heme-binding domain-containing protein; PFAM: Cytochrome c; Trehalose utilisation; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.476
AGA28247.1
Calx-beta domain-containing protein; PFAM: Calx-beta domain.
  
     0.476
AGA28176.1
Hypothetical protein.
  
   0.471
AGA29317.1
Hypothetical protein.
  
     0.443
AGA24839.1
Hypothetical protein.
  
     0.442
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.