STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28519.1Hypothetical protein. (260 aa)    
Predicted Functional Partners:
AGA26909.1
Hypothetical protein.
 
   0.604
AGA28518.1
PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
       0.558
AGA25337.1
PFAM: Protein of unknown function (DUF1559).
  
 
   0.549
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family.
  
    0.541
AGA30342.1
PFAM: Transposase IS66 family.
  
     0.519
AGA25376.1
Hypothetical protein.
  
     0.493
AGA25922.1
Hypothetical protein.
  
     0.473
AGA30464.1
Hypothetical protein.
  
     0.445
AGA30455.1
Type II secretory pathway, pseudopilin PulG; PFAM: Protein of unknown function (DUF1559).
  
     0.437
AGA29200.1
PFAM: Transcription termination factor nusG.
  
    0.429
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.