STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28537.1PFAM: Carbohydrate-selective porin, OprB family; Belongs to the OprB family. (489 aa)    
Predicted Functional Partners:
AGA28742.1
Hypothetical protein.
  
     0.692
AGA30668.1
PFAM: Glucuronate isomerase.
  
     0.679
AGA27535.1
PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein.
  
     0.652
AGA26795.1
PFAM: O-Antigen ligase.
  
     0.640
AGA25163.1
Hypothetical protein.
  
     0.609
AGA27991.1
PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
     0.554
AGA31309.1
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase; PFAM: Predicted membrane protein (DUF2079).
  
     0.527
AGA28774.1
Hypothetical protein.
  
     0.525
AGA29746.1
6-phosphogluconolactonase/glucosamine-6- phosphate isomerase/deaminase.
  
     0.512
AGA28361.1
PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; manually curated.
  
     0.510
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.