STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28589.1Hypothetical protein. (671 aa)    
Predicted Functional Partners:
AGA28588.1
Hypothetical protein.
 
     0.948
AGA28587.1
PFAM: Reverse transcriptase (RNA-dependent DNA polymerase).
 
     0.863
AGA27677.1
PFAM: SWIM zinc finger.
 
     0.768
AGA27679.1
NAD-dependent DNA ligase; PFAM: BRCA1 C Terminus (BRCT) domain.
  
     0.764
AGA30142.1
Hypothetical protein.
  
     0.763
AGA27678.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
  
     0.762
AGA25478.1
PFAM: Protein of unknown function (DUF790).
  
     0.682
AGA27676.1
PFAM: Reverse transcriptase (RNA-dependent DNA polymerase).
  
     0.679
AGA27727.1
Hypothetical protein.
  
     0.669
AGA25826.1
PFAM: Uncharacterised protein family (UPF0236).
  
     0.635
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.