STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28595.1Hypothetical protein. (386 aa)    
Predicted Functional Partners:
AGA28597.1
Hypothetical protein.
      
0.779
AGA28596.1
PFAM: YdjC-like protein.
       0.777
AGA28594.1
Putative homoserine kinase type II (protein kinase fold); PFAM: Phosphotransferase enzyme family.
       0.697
AGA28598.1
Hypothetical protein.
      
0.424
AGA28601.1
ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region.
  
   0.421
AGA28599.1
Putative glycosyltransferase; PFAM: Glycosyl transferases group 1; Glycosyl transferase family 2.
  
    0.413
AGA28600.1
Putative glycosyltransferase; PFAM: Glycosyl transferase family 2.
  
    0.413
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.