STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28623.1PFAM: Protein kinase domain; Tetratricopeptide repeat. (957 aa)    
Predicted Functional Partners:
AGA27782.1
PFAM: Protein phosphatase 2C.
 
 
 0.821
AGA25791.1
PFAM: Protein phosphatase 2C.
 
 
 0.818
AGA25428.1
Serine/threonine protein phosphatase; PFAM: Stage II sporulation protein E (SpoIIE).
 
 
 0.816
AGA28624.1
PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
 
   0.813
AGA28622.1
Hypothetical protein.
       0.689
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.545
AGA28626.1
Hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase.
 
     0.540
htpG
Molecular chaperone of HSP90 family; Molecular chaperone. Has ATPase activity.
  
 0.508
AGA29970.1
Hypothetical protein.
  
     0.504
AGA29336.1
Hypothetical protein.
  
     0.503
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.