STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28627.1Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase family. (618 aa)    
Predicted Functional Partners:
AGA28628.1
Hypothetical protein.
 
     0.921
AGA28625.1
Nicotinamidase-like amidase; PFAM: Isochorismatase family.
 
     0.901
AGA28629.1
PFAM: Cytosol aminopeptidase family, N-terminal domain.
 
     0.778
AGA27983.1
Nicotinamidase-like amidase; PFAM: Isochorismatase family.
 
     0.751
AGA28626.1
Hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase.
 
     0.669
AGA28630.1
PFAM: NADH:flavin oxidoreductase / NADH oxidase family; manually curated.
  
    0.532
AGA28631.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase.
       0.435
AGA28624.1
PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.410
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.