STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28633.1Hypothetical protein; Manually curated. (74 aa)    
Predicted Functional Partners:
AGA28632.1
Hypothetical protein.
       0.773
AGA28213.1
Putative transcription regulator containing HTH domain.
  
     0.569
AGA27124.1
Putative transcription regulator containing HTH domain; PFAM: Helix-turn-helix.
  
     0.483
AGA27796.1
Putative transcription regulator containing HTH domain; PFAM: Helix-turn-helix.
  
     0.481
AGA30873.1
Putative transcription regulator containing HTH domain; PFAM: Helix-turn-helix.
  
     0.442
AGA26350.1
PFAM: Uncharacterized conserved protein (DUF2294).
  
     0.423
AGA28968.1
Hypothetical protein.
  
     0.414
AGA27614.1
Putative phage-associated protein.
  
     0.413
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.