STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28658.1PFAM: Polysaccharide pyruvyl transferase. (409 aa)    
Predicted Functional Partners:
AGA29855.1
Cupin domain-containing protein; PFAM: Cupin domain.
 
    0.782
AGA28176.1
Hypothetical protein.
 
     0.774
AGA28659.1
Hypothetical protein.
       0.773
AGA24872.1
PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553).
  
     0.767
AGA26557.1
PFAM: Protein of unknown function (DUF3500).
  
     0.762
AGA28660.1
Putative glycosyltransferase; PFAM: Glycosyl transferase family 2.
       0.758
AGA27519.1
PFAM: Protein of unknown function (DUF3500).
  
     0.742
AGA24871.1
PFAM: Protein of unknown function (DUF1501).
  
     0.741
AGA29838.1
PFAM: FecR protein.
  
   
 0.732
AGA28815.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553).
  
     0.726
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.