STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28780.1PFAM: Copper type II ascorbate-dependent monooxygenase, C-terminal domain. (522 aa)    
Predicted Functional Partners:
AGA29946.1
PFAM: Calcineurin-like phosphoesterase.
    
 0.964
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.890
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
 
 0.864
AGA26176.1
Hypothetical protein.
   
 0.848
AGA27685.1
Hypothetical protein.
   
 0.848
AGA26103.1
Ubiquitin-protein ligase; PFAM: Ubiquitin-conjugating enzyme.
   
 0.767
AGA28522.1
Zn-finger-containing protein; PFAM: Zn-finger in ubiquitin-hydrolases and other protein; manually curated; non-canonical start codon.
   
 0.767
AGA27972.1
PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.756
AGA29118.1
Permease, glycerol uptake facilitator; PFAM: Major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.756
AGA25598.1
PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase.
   
 
 0.735
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.