STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28854.1PFAM: Trehalose utilisation. (272 aa)    
Predicted Functional Partners:
AGA25356.1
Putative heme-binding domain-containing protein; PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
     0.950
AGA28771.1
PFAM: Domain of Unknown Function (DUF1080).
  
     0.766
AGA29838.1
PFAM: FecR protein.
  
     0.751
AGA29813.1
PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
  
     0.735
AGA29855.1
Cupin domain-containing protein; PFAM: Cupin domain.
  
     0.734
AGA24872.1
PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553).
  
     0.732
AGA27055.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24.
  
     0.720
AGA27010.1
Putative thioesterase involved in non-ribosomal peptide biosynthesis; PFAM: Trehalose utilisation.
  
     0.717
AGA28912.1
PFAM: Trehalose utilisation.
  
     0.700
AGA28697.1
PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.695
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.