STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA28861.1Hypothetical protein (DUF2329); PFAM: Uncharacterized protein conserved in bacteria (DUF2329); Protein of unknown function (DUF3131). (569 aa)    
Predicted Functional Partners:
AGA25638.1
Cellobiose phosphorylase; PFAM: Uncharacterized protein conserved in bacteria (DUF2329); Glycosyltransferase family 36; Putative carbohydrate binding domain; Glycosyltransferase 36 associated family.
 
   
0.539
AGA28257.1
Zn-finger-containing protein; PFAM: Zn-finger in ubiquitin-hydrolases and other protein.
  
     0.426
AGA28522.1
Zn-finger-containing protein; PFAM: Zn-finger in ubiquitin-hydrolases and other protein; manually curated; non-canonical start codon.
  
   
 0.417
AGA28345.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.405
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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