STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29009.1ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter. (223 aa)    
Predicted Functional Partners:
AGA29010.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.932
AGA28590.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
   0.783
AGA29875.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
   0.759
AGA28961.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
   0.745
AGA27658.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
   0.687
AGA29708.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 0.681
AGA29176.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.678
AGA25095.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.677
AGA29011.1
PFAM: Protein of unknown function (DUF3299).
  
    0.583
AGA31163.1
TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.543
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.