STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29021.1Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase; COG3618. (284 aa)    
Predicted Functional Partners:
AGA27386.1
Hypothetical protein.
  
     0.705
AGA24512.1
PFAM: Protein of unknown function (DUF1501).
  
     0.694
AGA27519.1
PFAM: Protein of unknown function (DUF3500).
  
     0.648
AGA29020.1
PFAM: Protein of unknown function (DUF1501).
       0.628
AGA29838.1
PFAM: FecR protein.
  
     0.628
AGA31300.1
PFAM: FecR protein.
  
     0.614
AGA24841.1
Hypothetical protein.
  
     0.611
AGA31586.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
  
     0.598
AGA30979.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
 
   
 0.597
AGA24839.1
Hypothetical protein.
  
     0.585
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.