STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29136.1Hypothetical protein. (510 aa)    
Predicted Functional Partners:
AGA27473.1
LysM domain-containing protein; PFAM: LysM domain.
  
    0.908
AGA29137.1
ABC-type uncharacterized transport system involved in gliding motility, auxiliary component; PFAM: ABC-type uncharacterized transport system.
 
    0.882
AGA26903.1
Putative periplasmic or secreted lipoprotein; PFAM: Putative phospholipid-binding domain.
  
    0.832
AGA30635.1
Hypothetical protein.
 
     0.772
AGA29351.1
PFAM: PBS lyase HEAT-like repeat.
  
     0.770
AGA31124.1
Putative membrane protein, required for colicin V production; PFAM: Colicin V production protein.
  
     0.769
AGA27436.1
Hypothetical protein.
  
    0.768
AGA29017.1
Hypothetical protein.
  
     0.767
AGA25463.1
Hypothetical protein.
  
     0.766
AGA25482.1
Hypothetical protein.
  
     0.766
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.