STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29384.1PFAM: Fatty acid desaturase. (357 aa)    
Predicted Functional Partners:
AGA24588.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: PDZ domain (Also known as DHR or GLGF).
  
     0.617
AGA31304.1
Hypothetical protein.
  
     0.587
AGA27205.1
Mn2+-dependent serine/threonine protein kinase; PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family.
  
     0.581
AGA29385.1
ABC-type polar amino acid transport system, ATPase component; PFAM: ABC transporter.
       0.568
AGA29386.1
PFAM: Binding-protein-dependent transport system inner membrane component; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
       0.568
AGA29089.1
Hypothetical protein.
  
     0.564
AGA31574.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: MatE.
  
     0.561
AGA27377.1
PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family.
  
     0.554
AGA27582.1
Hypothetical protein.
  
     0.554
AGA27285.1
PFAM: Protein of unknown function (DUF2029).
  
     0.553
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.