STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29393.1PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase. (567 aa)    
Predicted Functional Partners:
AGA27945.1
PFAM: Glycosyl transferase family 2.
  
    0.714
AGA29831.1
PFAM: Glycosyl transferase family 2.
  
    0.625
AGA29674.1
PFAM: Glycosyl transferase family 2.
  
    0.550
AGA26784.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
  
  
 0.521
AGA28107.1
PFAM: Glycosyl transferase family 2.
  
    0.497
AGA28119.1
PFAM: Glycosyl transferase family 2.
  
    0.465
AGA29394.1
Hypothetical protein.
       0.463
AGA29395.1
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; PFAM: Aminotransferase class IV.
       0.457
AGA28026.1
PFAM: Glycosyl transferase family 2.
  
    0.448
AGA29450.1
PFAM: Protein of unknown function (DUF1009).
  
     0.439
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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