STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29410.1PFAM: Aldo/keto reductase family. (407 aa)    
Predicted Functional Partners:
AGA29970.1
Hypothetical protein.
 
     0.680
AGA29971.1
Hypothetical protein; PFAM: Domain of unknown function (DUF362).
  
     0.658
AGA29972.1
Hypothetical protein.
 
    0.639
AGA29336.1
Hypothetical protein.
  
     0.534
AGA29861.1
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein; PFAM: Aldo/keto reductase family.
  
     0.515
csrA-5
Carbon storage regulator (could also regulate swarming and quorum sensing); A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
       0.508
AGA27926.1
PFAM: Beta-galactosidase trimerisation domain.
  
     0.500
AGA28000.1
Putative integral membrane protein.
  
     0.495
AGA29226.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.476
AGA28425.1
Hypothetical protein.
  
     0.461
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.