STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29433.1Putative transcriptional regulator. (216 aa)    
Predicted Functional Partners:
AGA25694.1
Lipid A core-O-antigen ligase-like enyme; PFAM: O-Antigen ligase.
  
     0.606
AGA31072.1
Hypothetical protein.
  
     0.600
AGA29434.1
PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC.
  
    0.579
AGA29435.1
FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.
  
  
 0.566
AGA31480.1
Peroxiredoxin; PFAM: AhpC/TSA family.
  
    0.557
AGA25534.1
Fe2+/Zn2+ uptake regulation protein; PFAM: Ferric uptake regulator family; Belongs to the Fur family.
  
    0.496
AGA29648.1
Fe2+/Zn2+ uptake regulation protein; PFAM: Ferric uptake regulator family; Belongs to the Fur family.
  
    0.496
AGA26326.1
Hypothetical protein.
  
     0.469
AGA29436.1
FeS assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD.
  
  
 0.412
AGA29590.1
HEAT repeat-containing protein; PFAM: PBS lyase HEAT-like repeat.
  
     0.409
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.