STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29489.1TIGR00300 family protein; PFAM: LOR/SDH bifunctional enzyme conserved region; TIGRFAM: TIGR00300 family protein. (415 aa)    
Predicted Functional Partners:
AGA29488.1
N-dimethylarginine dimethylaminohydrolase; PFAM: Amidinotransferase.
     0.975
AGA28033.1
Hypothetical protein; PFAM: Domain of unknown function (DUF362).
  
     0.538
AGA26294.1
Hypothetical protein; PFAM: Domain of unknown function (DUF362).
  
     0.537
AGA29487.1
Phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA.
 
     0.506
AGA26958.1
NCAIR mutase-like protein; PFAM: AIR carboxylase.
 
     0.423
AGA26665.1
TIGR00299 family protein; PFAM: Protein of unknown function DUF111; TIGRFAM: TIGR00299 family protein; Belongs to the LarC family.
 
     0.400
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.