STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29497.1Hypothetical protein. (436 aa)    
Predicted Functional Partners:
AGA26301.1
Flp pilus assembly protein TadC; PFAM: Bacterial type II secretion system protein F domain.
 
    0.802
AGA26300.1
Flp pilus assembly protein TadB; PFAM: Bacterial type II secretion system protein F domain.
 
    0.795
AGA26298.1
Flp pilus assembly protein, ATPase CpaE; PFAM: Response regulator receiver domain; CobQ/CobB/MinD/ParA nucleotide binding domain.
 
    0.764
AGA25811.1
Flp pilus assembly protein, ATPase CpaE; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
    0.762
AGA26297.1
PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB.
 
    0.758
AGA26299.1
Flp pilus assembly protein, ATPase CpaF; PFAM: Type II/IV secretion system protein.
 
     0.734
AGA30118.1
Flp pilus assembly protein, secretin CpaC; PFAM: Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
     0.712
AGA26296.1
Flp pilus assembly protein, protease CpaA; PFAM: Type IV leader peptidase family.
 
     0.674
AGA29498.1
ATPase, YjeE family; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family.
  
    0.611
AGA27490.1
Hypothetical protein.
 
     0.571
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.