STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29528.1Hypothetical protein. (403 aa)    
Predicted Functional Partners:
AGA29527.1
Hypothetical protein.
 
     0.953
AGA31527.1
Hypothetical protein.
  
     0.640
AGA24790.1
TIGRFAM: conserved hypothetical protein.
  
     0.616
AGA30464.1
Hypothetical protein.
  
     0.549
AGA27926.1
PFAM: Beta-galactosidase trimerisation domain.
  
     0.508
AGA26850.1
Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain.
  
     0.504
AGA25954.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.497
AGA30270.1
Hypothetical protein.
  
     0.490
AGA30137.1
PFAM: Flp/Fap pilin component.
  
     0.455
AGA31199.1
Transposase family protein; PFAM: Transposase DDE domain.
  
     0.455
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.