STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29557.1PFAM: Plant Basic Secretory Protein; F5/8 type C domain. (354 aa)    
Predicted Functional Partners:
AGA24588.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: PDZ domain (Also known as DHR or GLGF).
  
     0.612
AGA29558.1
Arylsulfatase A family protein; PFAM: Sulfatase.
       0.605
AGA27459.1
Hypothetical protein.
  
     0.531
AGA29946.1
PFAM: Calcineurin-like phosphoesterase.
  
     0.527
AGA31505.1
PFAM: Cupin; TIGRFAM: bicupin, oxalate decarboxylase family.
  
     0.525
AGA29188.1
Protein tyrosine/serine phosphatase; PFAM: Tyrosine phosphatase family.
  
     0.522
AGA26850.1
Hypothetical protein; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain.
  
     0.509
AGA28964.1
Hypothetical protein.
  
     0.486
AGA25127.1
PFAM: RHS Repeat; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
  
     0.485
AGA24739.1
PFAM: RHS Repeat; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
  
     0.480
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.