STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29591.1WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat. (626 aa)    
Predicted Functional Partners:
AGA29099.1
Hypothetical protein.
  
 
  0.657
AGA25682.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat.
  
 
  0.648
AGA26543.1
Hypothetical protein.
  
 
  0.623
AGA24469.1
PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
  
     0.602
AGA26989.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
  
 
  0.479
AGA25536.1
PFAM: Anti-sigma-28 factor, FlgM.
  
   0.468
AGA29592.1
PFAM: Protein kinase domain.
      0.448
AGA24560.1
Hypothetical protein.
  
 
  0.425
AGA24769.1
PFAM: Tetratricopeptide repeat.
  
 
  0.425
AGA27669.1
PFAM: von Willebrand factor type A domain; Vault protein inter-alpha-trypsin.
  
     0.422
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.