STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29612.1PFAM: Beta-galactosidase trimerisation domain. (730 aa)    
Predicted Functional Partners:
AGA29281.1
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.732
AGA24872.1
PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553).
  
     0.703
AGA28592.1
Hypothetical protein; PFAM: Pyridoxamine 5'-phosphate oxidase.
  
     0.691
AGA29838.1
PFAM: FecR protein.
  
     0.690
AGA24816.1
PFAM: BNR/Asp-box repeat.
  
 0.689
AGA25326.1
PFAM: BNR/Asp-box repeat.
  
 0.689
AGA27092.1
PFAM: BNR/Asp-box repeat.
  
 0.689
AGA31027.1
Putative heme-binding domain-containing protein; PFAM: Cytochrome c; Copper binding proteins, plastocyanin/azurin family; Xylose isomerase-like TIM barrel; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.674
AGA26304.1
Hypothetical protein.
  
     0.621
AGA29611.1
PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); exosortase A system-associated amidotransferase 1.
       0.615
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.