STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29657.1Hypothetical protein. (465 aa)    
Predicted Functional Partners:
AGA29658.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain.
 
     0.924
AGA29659.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain.
 
     0.791
AGA26082.1
PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.653
AGA30642.1
PFAM: Protein of unknown function DUF58; manually curated.
 
    0.638
AGA25277.1
Large extracellular alpha-helical protein; PFAM: Alpha-2-macroglobulin family; MG2 domain; Alpha-2-macroglobulin family N-terminal region.
 
  
 0.557
AGA28206.1
PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain.
  
     0.544
AGA28204.1
Hypothetical protein.
  
     0.539
AGA26929.1
PFAM: Bacterial membrane protein YfhO.
  
     0.533
AGA30061.1
Hypothetical protein.
  
     0.515
AGA31574.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: MatE.
  
     0.505
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.