STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29745.1Calx-beta domain-containing protein; PFAM: Calx-beta domain. (728 aa)    
Predicted Functional Partners:
AGA24481.1
PFAM: Multicopper oxidase.
   
 
 0.553
AGA30712.1
PFAM: GTPase of unknown function; TGS domain.
    
   0.531
AGA29744.1
Amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase.
       0.520
AGA28366.1
PFAM: Phosphatidylethanolamine-binding protein; TIGRFAM: Raf kinase inhibitor-like protein, YbhB/YbcL family.
   
 
 0.491
AGA24560.1
Hypothetical protein.
  
 
   0.474
AGA31201.1
FG-GAP repeat protein.
  
    0.474
AGA28258.1
Hypothetical protein.
  
     0.447
AGA25901.1
PFAM: Suppressor of fused protein (SUFU).
  
 
 
 0.445
AGA25731.1
Hypothetical protein.
  
 
   0.442
AGA26700.1
PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type); Belongs to the citrate synthase family.
    
   0.438
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.