STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA29755.1Periplasmic component of the Tol biopolymer transport system; PFAM: WD40-like Beta Propeller Repeat. (344 aa)    
Predicted Functional Partners:
AGA30862.1
Putative aminopeptidase; PFAM: PA domain; Peptidase family M28.
     0.966
AGA25140.1
PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; TIGRFAM: 40-residue YVTN family beta-propeller repeat.
   
   0.781
AGA29107.1
YVTN family beta-propeller repeat protein; PFAM: Di-haem cytochrome c peroxidase; TIGRFAM: 40-residue YVTN family beta-propeller repeat.
   
   0.781
AGA31468.1
YVTN family beta-propeller repeat protein; PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; TIGRFAM: 40-residue YVTN family beta-propeller repeat.
   
   0.781
AGA29754.1
Protein of unknown function (DUF664).
       0.643
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
       0.610
AGA29756.1
PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.564
AGA29757.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.526
AGA25277.1
Large extracellular alpha-helical protein; PFAM: Alpha-2-macroglobulin family; MG2 domain; Alpha-2-macroglobulin family N-terminal region.
  
  
 0.514
AGA29752.1
Esterase/lipase; PFAM: alpha/beta hydrolase fold.
       0.502
Your Current Organism:
Singulisphaera acidiphila
NCBI taxonomy Id: 886293
Other names: S. acidiphila DSM 18658, Singulisphaera acidiphila DSM 18658, Singulisphaera acidiphila MOB10, Singulisphaera acidiphila str. DSM 18658, Singulisphaera acidiphila strain DSM 18658
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.