STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps830S ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)    
Predicted Functional Partners:
eif1a
Translation initiation factor eIF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
 
 0.999
Nlim_0116
Hypothetical protein Nmar_0535.
   
 0.999
Nlim_0395
Ribosomal protein L6.
 
 
 0.999
Nlim_0397
Ribosomal protein S14.
 
 0.999
Nlim_0398
50S ribosomal protein L5P; Belongs to the universal ribosomal protein uL5 family.
 
 
 0.999
rps4e
30S ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family.
 
 0.999
rpl24
KOW domain-containing protein; Located at the polypeptide exit tunnel on the outside of the subunit.
 
 0.999
rpl14
Ribosomal protein L14b/L23e; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 
 0.999
rps17
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
 
 0.999
rpl29
Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 0.999
Your Current Organism:
Nitrosarchaeum limnium
NCBI taxonomy Id: 886738
Other names: C. Nitrosarchaeum limnium SFB1, Candidatus Nitrosarchaeum limnium SFB1, Candidatus Nitrosoarchaeum limnia SFB1, Nitrosarchaeum limnium SFB1, Nitrosoarchaeum limnia SFB1, Nitrosopumilaceae archaeon SFB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.